Major Organic Compounds or Biomolecules Made with Carbon

Biochemistry Essential Question

How do molecules sustain living things?

 

Guiding Questions

1.      What are the major groups of organic compounds and how do they function in living things?

2.      What is an enzyme and how does it function in cells?

3.      Why is water essential to life?

4.      What are the distinguishing chemical and physical properties of water?

Literacy Articles over Biochemistry:

 

“Enzyme may aid people with Alzheimer's Disease”

 

“Tiny Invader”

 

“Lactic acid is not muscles' foe, it's fuel”

 

 

 

Biochemistry Worksheet

        Section 3.1 - Properties of Water  

  1. Why is water such an important molecule to living things?

 

2. Describe the chemical make up and type of bonding found in water molecules.

 

3. Explain why the hydrogen and oxygen atoms don't share electrons equally in a water molecule.

 

4. What is the effect of this uneven sharing of electrons in water?

 

5. Sketch a molecule of water showing the charges on the molecule.

 

 

6. What is the overall charge on a water molecule? Explain why.

 

 

7. Define polar compound and give an example.

 

8. Water's polarity makes it very effective in _____________ other substances.

9. Name 2 types of compounds that dissolve well in water.

10. What happens when an ionic compound such as sodium chloride (table salt) dissolves in water?

 

11. Water molecules are ___________ to other water molecules.

12. What type of bonding holds 2 or more water molecules together?

13. Are hydrogen bonds strong or weak bonds? Can they be easily broken?

14. Water molecules attracting other water molecules is called _________________.

15. Cohesion of water molecules produces ________________ tension making water seem like it has a "skin" on it. Surface tension enables some _____________ to walk across the surface of the water.

16. Water molecules attracting other types of molecules is called _________________.

17. Adhesion and cohesion together enable water molecules to move ____________ through narrow tubes against the force of gravity.

18. The above property of water is called _________________.

19. Give an example of an organism using capillarity.

 

20. What must be true for water to change temperature?

 21. What effect does heating water have on the hydrogen bonds holding the water molecules together? What happens to the speed at which the molecules are moving?

 

22. Give an example of how this water property helps organisms in the environment.

 

Section 3.2 - Carbon Compounds

23.  What is an organic compound?

 

24. Besides carbon, name 3 other elements that make up most organic compounds.

25. Carbon dioxide, CO2, is NOT an organic compound. Explain why

 

26. How many electrons are in the outermost energy level of carbon? How many does it need to have this energy level filled?

27. How many covalent bonds can carbon form?

28. Name 3 structural shapes that form whenever carbon atoms bond to other carbon atoms.

 

29. How many electrons are being shared in a single covalent bond? double covalent bond? triple covalent bond? quadruple covalent bond? 

 

30. Draw these 3 molecules and circle a single bond, double bond, and a triple bond in your drawings --- benzene, acetylene, and ethanol.

 

 

31. Explain what is meant by a functional group, & tell what effect they have on the molecules they are attached to.

 

32. Write the formula for these functional groups (use your textbook & handout) --- hydroxyl, carboxyl, phosphate group, amino group, and methyl group.

 

 

33. Hydroxyl groups attached to carbon atoms forms an _____________. Name an alcohol used in humans to assemble molecules needed for life.

34. Large carbon molecules are built from smaller, simpler molecules called ____________.

35. Large carbon molecules made of monomers are called _______________.

36. What are large polymers called?

37. What type of reaction links monomers to make polymers?

38. Sketch a molecule of sucrose (table sugar) formed from condensation. Name the 2 sugars that were combined to form sucrose.

 

 

39. Condensation reactions involve the removal of a molecule of ____________.

40. What reaction is used to breakdown polymers? Is water added or removed? How does this compare to condensation?

 

41. All life processes require a constant supply of ____________. Name the molecule used by cells to get energy. Give its abbreviation.

42. ATP contains what 3 functional groups covalently bonded together? Write the formula for this functional group.

43. Which bonded phosphate group on ATP releases the MOST energy when broken?

Section 3.3 - Macromolecules

44. Name the 4 main classes of macromolecules (organic molecules) & tell what 3 elements all of these contain.

 

Carbohydrates store energy for organisms!

45. In what ratio are hydrogen & oxygen atoms in carbohydrates?

46. In what 3 forms do carbohydrates exist?

47. What are the monomers of carbohydrates called? What is their common name? Give the ratio of carbons, hydrogens, & oxygens.

48. Name the 3 MOST common monosaccharides.

49. Sketch & label a molecule of each of these monosaccharides. How do they compare? Write the chemical formula for all three.

 

 

 

50. Because all 3 simple sugars have the same chemical, but different structural formulas, they are called _______________.

51. What are double sugars called? Name & describe the process that forms them.

 

52. Name a disaccharide.

53. What forms a polysaccharide? Name a polysaccharide found in animals. Name 2 found in plants?

 

54. What chemical reaction formed these large molecule? What reaction would be needed to break these molecules?

 

Proteins are used to build cells, & they act as enzymes!

55. What are the 4 main elements making up proteins? How many covalent bonds does each of these elements form?

 

56. Sketch these two amino acids --- glycine & alanine.  Circle the center carbon, place a triangle around the amino group, and put a box around the carboxyl group.

 

 

 

 

 

57. What are the monomers of proteins called? How many are there? Name the 4 things bonded to the center carbon of this monomer.

 

 

58. The main difference among amino acids is their ___________ group. What is the R-group on glycine? on alanine?

59. Differences in R-groups give different proteins different ______________.

60. How does a dipeptide form? Sketch the dipeptide formed from glycine and alanine. What molecule had to be removed to join these 2 amino acids?

 

 

 

61. What do you call the covalent bonds that hold amino acids together? Put a box around these bond in the sketch you did on question 60.

62. Long chains of amino acids are called ___________________ and these join together to make a ________________.

63. Hydrogen bonding among individual amino acids in a chain cause what effect on the protein's shape?

64, What is the effect of temperature on protein shape? Give an example of this.

 

65. Most proteins act as catalysts or __________________ inside of cells. 

66. The substance an enzyme is acting upon is called the _____________ and it must ______ into a place called the active site on the enzyme.

67. When a substrate joins with an enzyme, what effect does this have on chemical bonding of that substrate? Is the enzyme affected temporarily or permanently? How is it affected? 

 

68. When chemical bonds in a substrate are weakened, what effect does this have on activation energy needed to start the reaction?

69. After the reaction, what happens to the products? Can the enzyme be re-used & why?

 

70. Besides temperature, what else can effect how an enzyme works by changing the enzyme's shape? Can the reaction still take place?

Lipids include fats that are used for long-term energy storage!

71. Are lipids polar or nonpolar? What happens to lipids when they are placed in water?

72. Compared to carbohydrates, what is true about the ratio of carbon & hydrogen atoms to oxygen atoms? If a compound has more bonds, what can it store more of in those bonds?

 

73. Most lipids are made of ______________ acids. Describe their shape. What functional group is found on the head end of the molecule?

 

74. Sketch these 2 fatty acids --- palmitic & linoleic.  Circle the carboxyl group on the "head" of the molecule. Is this end polar or nonpolar? Will this end be attracted to  or repelled by water?

 

 

 

 

 

75. Are both ends of a fatty acid polar? Explain.

76. Hydophilic means water ___________. Which end of  a fatty acid is hydrophilic. The nonpolar end of a fatty acid is said to be _______________ or "water fearing".

77. Which end of a fatty acid chain WOULD dissolve in water? Which WOULDN'T?

 

78. In what type of fatty acid are there only single bonds in the carbon chain? Name one such fatty acid.

79. What type of bond appears in an unsaturated fatty acid? Give an example of an unsaturated fatty acid. Go back to your fatty acid drawings in question 74 and put a box around the double bond in the unsaturated fatty acid. 

 

80. Name the 3 groups of complex lipids.

81. What makes up a triglyceride? What is the difference between a saturated & unsaturated triglyceride?

 

82. What type of triglycerides tend to be solids at room temperature & why? Which are liquids & why?

 

83. What type of triglyceride would this of  substance be --- vegetable oil?  butter & shortening?

84. What makes up a phospholipid? How are they different from triglycerides? What main part of a cell is made of phospholipids?

 

85. What is meant by a lipid bilayer? What makes this such an effective barrier between the inside & the outside of the cell?

 

86. Wax is another complex lipid. Describe its structure.

 

87. Waxes are highly _________________. Explain how plants make use of this property? animals?

 

88. What makes up steroids? To what group of organic compounds do steroids belong? How are they used in animals?

 

89. Name a steroid made by the body & used by nerve cells.

Nucleic acids  store genetic information for cells!

90. Give the name & abbreviation for 2 nucleic acids found in cells.

 

91. DNA and RNA are both examples of _____________ made of linked monomers called ________________.  The instructions in these molecules is used to make ____________.

92. Name the 3 parts to a nucleotide then draw and label one.

 

Biological Macromolecule

Elements Ratio

Function

Monomer

Examples

Functional Group(s)

 

 

 

Carbohydrate

-ose

 

 

 

CHO

1:2:1

- Short term energy storage

 

- Structure (cell walls & exoskeletons)

 

Monosaccharide

-Glycogen

-Chitin

-Cellulose

 

-Glucose fructose galactose

 

-sucrose lactose maltose

-OH

 

 

 

Lipids

 

 

 

CHO

1:2:very few

 

 

 

 

 

 

 

Proteins

 

 

 

CHON

No ratio

 

 

 

 

 

 

 

 

Nucleic Acids

 

 

CHONP

No ratio

 

 

 

 

 

 

Biochemistry Review

 

MULTIPLE CHOICE:
Circle the letter for ALL the answers that are TRUE.

THERE MAY BE MORE THAN ONE CORRECT ANSWER.

 

1.NO other kind of atom can form the number and variety of molecules that ___________________  can because it can bond to 4 other atoms at the same time to make carbohydrates, lipids, nucleic acids, and proteins.

        A. hydrogen

        B. oxygen

        C. carbon

        D. sodium

 

2.A ____________________ is made up of a sugar, a nitrogen base, and a phosphate group.            

        A. amino acid

        B. nucleotide

        C. phospholipid

        D. glycoprotein

 

3.Circle the nitrogen base found in DNA but NOT RNA is _____________________

 

        Adenine     Thymine      Guanine      Cytosine      Uracil

       

4.Lipids are different from other macromolecules because they ___________________

        A. are hydrophobic and don’t dissolve in water

        B. contain carbon, hydrogen and oxygen in a ratio of 1:2:1

        C. dissolve easily in water

        D. form large protein molecules     

        E. are hydrophilic

 

5.Glycogen, cellulose, and starch are all __________________.

        A. proteins

        B. polysaccharides

        C. nucleic acids

        D. lipids

        E. phospholipids

 

6.Which 2 kinds of molecules combine to form cell membranes?

        A. nucleic acids and carbohydrates

        B. phospholipids and proteins

        C. carbohydrates and nucleic acids

        D. polysaccharides and RNA

 

7.Adenine, thymine, guanine, cytosine, and uracil are all _____________________

        A. amino acids used to make proteins

        B. carbohydrates used to make polysaccharides

        C. lipids used to make phospholipids

        D. nitrogen bases used to make nucleotides

 

8.Which part of a phospholipid molecule is NON-POLAR & HYDROPHOBIC?

        A. the lipid “tails”

        B. the glycerol/phosphate “head”

 

                                             

 

 

Draw the following:


 

    ________  POLYSACCHARIDES    

 

    ________  NUCLEIC ACIDS

 

    ________  PROTEINS

                                       

                                    A              B                      C

 

*    *    *    *    *    *    *    *    *    *    *    *    *    *

TRUE or FALSE

Circle T if the statement is TRUE
Circle F if the statement in FALSE and use the blank provided to correct the underlined word/phrase.

 

T       F       The 20 different polysaccharides used to make proteins differ in what is attached in their
            R group position.  _____________________

 

T       F       Cellulose is a structural polysaccharide that makes plants sturdy.  ___________________

 

T       F      One function of proteins is to provide insulation. __________________

 

T     F      People with diabetes can’t make hemoglobin to control their blood sugar.

                     __________________________
Match the molecule with its description:

 

LIPIDS      CARBOHYDRATES         PROTEINS           NUCLEIC ACIDS

 

____________________________ made by joining amino acid subunits in long chains which provide a wide variety of functions in cells

 

____________________________ made from carbon, hydrogen, and oxygen atoms in a 1:2:1 ratio

 

____________________________ made from nucleotide subunits which store and carry information                                                  

____________________________ Hydrophobic fats, oils, waxes, & steroids made mainly from carbon and hydrogen atoms in long chains or multiple rings

 

 

 

COMPARE:

KINDS OF CARBOHYDRATES

# of SUGARS it contains

GIVE 3 EXAMPLES

 

MONOSACCHARIDES

 

 

 

 

POLYSACCHARIDES

 

 

 

 

 

 

 

MACROMOLECULES

GIVE SOME FUNCTIONS OF EACH

 

CARBOHYDRATES

 

1.

 

2.

 

 

NUCLEIC ACIDS

 

1.

 

2.

 

 

LIPIDS

 

1.

 

2.

 

3.

 

 

PROTEINS

 

 

 

1.

 

2.

 

3.

 

4.

 

5.

 

 

 

 

COMPARE NUCLEIC ACIDS:

DNA

RNA


Is it Single/double stranded?
 

 

 


Which Nitrogen bases does it contain?
 

 

 

 

Which Sugar does it contain?

 

 

 

 

Function(s)?

 

 

 


 

Protein hormone that tells animal cells to store blood glucose as glycogen

 

Double stranded nucleic acid made from nucleotides subunits containing A, T, G, and C that stores genetic info in cells

 

Protein found in red blood cells that carries oxygen to the body

 

 

Membrane protein with carbohydrates attached that helps cells identify “self” and plays a role in blood types, organ transplants, and germ recognition

 

Macromolecule with a polar glycerol/phosphate “head” and 2 non-polar hydrophobic “tails” used to make cell membranes

 

Single stranded nucleic acid made from nucleotide subunits

containing A, U, C, and G which carries information from the DNA to the cell for protein synthesis

 

 

Storage form of glucose used by plant cells

 

 

Storage form of glucose used by animal cells

 

 

Structural polysaccharide made from glucose subunits that makes plants sturdy

 

Nucleotide subunit made from ribose sugar, adenine, and 3 phosphates which stores and transports ENERGY in cells

 

Polar molecule made from 1 oxygen and 2 hydrogen atoms that is required by all living things

                                                                             

 

                                            

 

 

 

 

 

Proteins (like enzymes) unwind or ___________________ when placed in extreme pH or temperature conditions.

       A. desensitize

       B. polymerize

       C. depolarize

       D. denature

 

Enzymes are ___________________________

       A. used up during chemical reactions

       B. unchanged  during chemical reactions and reusable

      

Draw EACH COMPONENT IN THE ENZYME 

_____ PRODUCTS

_____ SUBSTRATE

_____ ACTIVE SITE

_____ ENZYME-SUBSTRATE COMPLEX

_____ ENZYME

 

 

 

Name two (2) environmental conditions that can cause proteins (enzymes) to change their shape.

 

       ______________________________         __________________________

 

Many genetic diseases result from the production of enzymes that are not shaped correctly. How does changing in an enzyme’s shape cause it to work poorly or not at all?

 

 

 

 

DNA polymerase is a molecule found in all cells.  Judging by its name, do you think it is an enzyme?  YES   NO   HOW CAN YOU TELL? 
 

_____________________________________________________________________

 

Modified from: http://brookings.k12.sd.us/biology/other_units.htm